On-line Service

gDecoy gDecoy [PudMed] to support users to upload a target sequence database, select an enzyme for in silico digestion, and conveniently generate a decoy sequence database using one of the reverse, pseudo reverse, and pseudo shuffle methods.
iHPDM in silico Human Proteome Digestion Map (iHPDM )[PudMed] contains a comprehensive peptide database of the human proteins in neXtProt digested by 15 protease combinations of single and two proteases. peptides in the entire human proteome digested by various proteases (specifically, 15 protease combinations), Each digested peptide is annotated with the following information: length, mass (molecular weight), sequence, starting and ending positions in the protein, PTMs, and whether unique.
MAGIC-web SVMSignal MAGIC-web [PubMed] is a web server aiming to provide mass spectrometry-based automated glycoprotein identification service. The web server features MAGIC [PubMed] and MAGIC+ for untargeted and targeted glycoprotein analysis.

Service Not available

TMhitTMhit Allan Lo, Yi-Yuan Chiu, Einar Andreas Rødland, Ping-Chiang Lyu, Ting-Yi Sung, and Wen-Lian Hsu, Predicting helix-helix interactions from residue contacts in membrane proteins, Bioinformatics, volume 25, number 8, pages 996-1003, April 2009.
TMexpoTMexpo Jhih-Siang Lai, Cheng-Wei Cheng, Allan Lo, Ting-Yi Sung, and Wen-Lian Hsu, Lipid exposure prediction enhances the inference of rotational angles of transmembrane helices, BMC Bioinformatics, volume 14, pages 304, October 2013.
TMPadTMPad Allan Lo, Cheng-Wei Cheng, Yi-Yuan Chiu, Ting-Yi Sung, Wen-Lian Hsu, TMPad: an integrated structural database for helix-packing folds in transmembrane proteins, Nucleic Acids Research, volume 39, number Database issue (Suppl. 1 ), pages D347--355, January 2011.